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10XGenomics / cellranger

10x Genomics Single Cell Analysis
https://www.10xgenomics.com/support/software/cell-ranger
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ERROR in running Cellranger multi for BEAM-T #242

Closed Esche-Hohenstein closed 10 months ago

Esche-Hohenstein commented 10 months ago

Hi all,

I meet a confusing error info when following official tutorial https://www.10xgenomics.com/support/software/cell-ranger/latest/tutorials/cr-tutorial-multi-beam-t. After I have tackled all the data and files properly and run the multi command, it reports following info

` [error] Pipestance failed. Error log at: beam-ab-run/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PRO CESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk75-u80079f83b2/_errors

Log message: Job failed in stage code

exit status 101

Waiting 6 seconds for UI to do final refresh. Pipestance failed. Use --noexit option to keep UI running after failure.

2024-01-11 14:16:36 Shutting down. Saving pipestance info to "beam-ab-run/beam-ab-run.mri.tgz" For assistance, upload this file to 10x Genomics by running:

cellranger upload "beam-ab-run/beam-ab-run.mri.tgz"

` does anyone have idea how this error occured and what could I do? many thx : (

github-actions[bot] commented 10 months ago

Thank you for your interest in Cell Ranger. GitHub Issues are not monitored by our support team. Please e-mail support@10xgenomics.com for support with Cell Ranger or visit our documentation site at https://www.10xgenomics.com/support/software/cell-ranger.