using scHLA-count for 3' 10x scRNA-seq data

10XGenomics / scHLAcount

Count HLA alleles in single-cell RNA-seq data

MIT License

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using scHLA-count for 3' 10x scRNA-seq data #27

Open adhisadi opened 1 month ago

adhisadi commented 1 month ago

Hi, Do you recommend to use scHLAcount for 3' data (at all)? Reading the documentation, I get the idea but I was wondering if anything has been done about "the future work: Improve genotyping algorithm, especially on 3' GEX" If no, are there any tools I could use?