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Add support for BigWig and BigBed.
arq5x updated
10 years ago
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I am creating a list of histograms, one for each file using below code:
### Imports ###
import numpy as np
import pyBigWig as bw
import matplotlib.pyplot as plt
import os
### For Loop ###
dir…
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Many tables such as ncbiIncidentDB and wgEnsembleFooBar contains only a filename record pointing bigBed / bigWig files.
Some mechanism to support access to these files are required. Automatic downloa…
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While I wanted to create bigbed file I got error:
![image](https://github.com/databio/bedboss/assets/41573628/de63207c-bbcb-4a55-a360-220e6ecade1b)
Should we standardize bedfiles? Or what should w…
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Hello,
Recently there was some work with BED files and RefSeq/Genbank chromosome IDs which typically have a period in them for versioning purposes (e.g. "NC_000001.11"). This is currently not allow…
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I have tried to visualize the output of 2 different bacteria genomes with no success. It stops at the BigBED file.
This is run on a Ubuntu vm.
jen@jen-VirtualBox:~/GALES/bin/viewtest$ /home/jen/GA…
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I'm trying to write data to a BigBed file on each human chromosome, I defined my writer as such :
```julia
writer = BigBed.Writer(file, [(chr, length(genome[chr])) for chr in chrs])
```
With `…
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When I load bigBed tracks into JBrowse, I noticed that the `utrColor` style setting is not used. Instead, the entire feature is the same color, unlike the `ProcessedTranscript` glyph. This is because …
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BigBed gene grouping is sort of difficult since there is no gene hierarchy indicating transcript children, so currently BigBed transcripts of the same gene arent loaded into a single gene glyph
Cou…