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It would be great if the ideogram plot only plotted the main ortholoug chromosomes. Else you get images like:
…
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Sorry for my naive questions. I ran Flye on a set of ONT reads twice: (1) without `--scaffold`; and (2) with `--scaffold`. Run 1 produced a single ~55kb contig, and run 2 produced a single ~65kb conti…
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Hello,
In the supplemental information of the BioRxiv preprint (https://www.biorxiv.org/content/10.1101/2023.02.06.527280v2.supplementary-material) I read that over-prediction in small contigs (small…
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Dear authors! Thank you for the program. Is it possible to realize identification of eukaryotic viruses from contigs bypassing assembly?
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From: https://github.com/pombase/website/issues/2142#issuecomment-1946736885
```
gene_uniquename | pmid | annotation_date | source_file
-----------------+---------------+-------…
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Hi,
Thank you so much for having created such a nice workflow!!
Depending on the species I am running it, I get this error, sometimes for every resolution, sometimes only for one:
```
Job …
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Hi,
I am trying to run votu and something is wrong.
Here is the commend I used:
phabox2 --task votu --dbdir /data2/lishang/phabox_db_v2/ \
> --outpth $Prjdir/Phabox2 \
> --conti…
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We have a couple of new GWSS plotting functions recently added and coming in, which would be cool to showcase/advertise.
* Ability to use virtual contigs like "2RL", "3RL" or "23X" to plot concate…
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Hi Kris (and Karthik),
My student is trying to bin contigs identified by VirSorter using vRhyme. He is using as input contigs identified by VirSorter as viral, as well as sorted bam files that were…
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Dear SqueezeMeta developpers,
I am running SqueezeMeta on longitudinal oral microbiome samples using the co-assembly mode for each patients individually. My main objective is to obtain patient spe…