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currently joern support ghidra2cpg, with use ghidra to load binary to cpg.
but it seems only use the assembly instruction, why not use the decompiler infomation?
```
Call(
argumentIndex …
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I am looking at CpG methylation probabilities from the jasmine-processed example data _HG002.GRCh38.haplotagged.bam_ (downloaded from [here](https://downloads.pacbcloud.com/public/revio/2022Q4/WGS-var…
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Hello, I am currently using the joern tool, I have already used Joern-parse to output cpg files, and now I want to use a python script to implement calls to joern on the command line. And get the CPG.…
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Elevated mutation rates at CpG dinucleotides are one of the major contributors to mutation rate variation in mammals. These can't easily be simulated by `sim_mutations`, but there are probably reasona…
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Hi I would like to know if all CpG are reported in the modkit pileup if we specify no-filtering ? Even those that are not methylated ?
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if a CpG does not include in a dataset, the impute standard will not add it to the data.
this will cause an issue using the deconvolution method since those missing CpGs will make the results very b…
moqri updated
4 weeks ago
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Hello,
I have some DNA methylation data, which I prepared using EM-Seq and got around 236 million paired-end reads after sequencing on the Illumina NextSeq platform. I have some concerns regarding …
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Hello Alex,
I have a small question about RRBS methylation data.
It is my question that I post before.
My question this time is how to use RRBS methylation data to do a boxplot based on CpG s…
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Would it be useful/advisable to have a link to the CPG somewhere near the top of this guide?
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https://batch.hail.populationgenomics.org.au/batches/443824/jobs/400
`ModuleNotFoundError: No module named 'cpg_utils.constants'`
in AnnotateVcf (SV)