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Hi,
Do you plan to make a database for Eukaryotes e.g. Fungi? Because this is largely missing in many metagenomic tools. I thought having a RefSeq database for Eukaryotes would be really good.
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Hi Mike,
I'm a PhD student in Laura Hug's lab currently working on a side project related to constructing universal ToLs. I was following your ToL example using the universal marker gene set and no…
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I'm not sure that we need these terms, they are all describing the source of the intermediate 4-Hydroxybenzoate (4-HB) required by the second step performed by cox2 in higher eukaryotes and UbiA …
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hi @d0ugal
I hava question about annovar, As we known, the gene structures of eukaryotes and prokaryotes are different. so How to use annovar to annotate the mutations identified in bacterial…
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Hello,
I executed the SqueezeMeta 1.70beta8 workflow on 98 MAGs using the -extbins flag. It appears the sqm_counter read mapping step is taking an excessively long period of time, about 5 hours or …
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Dear developers,
Thank you for this really cool tool. I am using another tool to profile eukaryotes and there I know how many marker genes were detected per species. This is also important for norm…
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Dear Bao,
I want to extend the scaffolds of an Eukaryote assembly, I have the reads and the scaffolds of my focus species, and would like to know how the reference genome should be organized. Shoul…
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To do:
- [ ] Classification via BUSCO for `NA` bins
- [ ] EukRep
- [ ] EUKElele
- [ ] Binning from #8
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These are all "mitochondrial membrane" in eukaryotes and "plasma membrane" in bacteria
Rule: don't transfer compartments from bacteria/archaea to eukaryotes
Atp5 F1-FO ATP synthase delta subunit…
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Hello,
I was wondering if this program can be used for small eukaryotic genomes (