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IsobaricAnalyzer (and ITRAQAnalyzer) throws an Exception when supplied with the spectra I have mailed to the mailing list. (Tried to upload here but github "can't process that file".)
My commandline …
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Given the new `OnDiskMSnExp` infrastructure, it is time to upgrade the `quantify` method. I am considering the following signature (only focusing on the most important arguments for now):
```r
quant…
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From https://sentry.galaxyproject.org/share/issue/da466f63ec5541e58db2ce827ada3918/.
I can't see any use of `$protein` in the configfile, but this is not easy to read.
These were the selection optio…
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From crux-users:
Hi everyone,
I have some TMT 10-plex data. Is there a recommendation on how to extract individual TMT reporter ion intensity, preferably within the crux-toolkit? At which step (…
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I'm currently trying to get the docker version of PyQuant to work at my pc. As a test, i tried to replicate the method in integration_isobaric_tags.py in the test folder of the repository with the dat…
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Has your group considered adding support for [RawTools](https://github.com/kevinkovalchik/RawTools)? This would give a few benefits:
1. You could use it to make your MGF inputs in an operating syst…
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Quantitative Behavior of Mass Spectrometers
To apply the theory we learnt in the last chapters of this unit to quantitative analyses with mass spectrometers, we need to think about the limitations th…
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Hello Fengchao and team,
I have performed a sample prep which uses both isotopic and isobaric labeling to essentially multiply the multiplexing capabilities. Specifically, for isotopic labeling I h…
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**- Upload your log file**
[log_2024-05-10_14-52-03-ModTag.txt](https://github.com/Nesvilab/FragPipe/files/15279003/log_2024-05-10_14-52-03-ModTag.txt)
[log_2024-05-10_15-01-17-none.txt](https://git…
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Hello,
Thank you for developing a tool for quant and visualization of isobaric data. I am trying to test out the application on a Windows 11 machine using your test files and having trouble with a…