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HI,
I try to draw a manhattan plot, my plot just shows 300 SNP
my input file is the output file of pyseer( T304_SNPs_02_98.txt),
how can I find the input file with all of the SNP and with P va…
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Hi Kivanc,
I've updated kGWASflow and tried to run the analysis including aligning the kmers. Unfortunately, generating the Manhattan plot yields errors, with unhelpful logs:
```
y_max: 19.2846…
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Dear Peter:
Sorry to bug you on this. I am very puzzled that some of my GWAS do NOT have Manhattan plot displayed. Please see the screenshot below. Even after I clicked the "Manhatten" link, noth…
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Hello Nikolaos and Pavlos,
I understand there were issues about Mahattan plots already asked by other ppl. However, I am encoutering something new that others did not mention. I am hoping to get som…
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**Is your feature request related to a problem? Please describe.**
Need plotting method for summary statistics
**Describe the solution you'd like**
A clean, interactive manhattan plot implemented…
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Hello, I wonder if its possible to color the signals above the 2 significance lines in the same way.
What I'm seeing is for example those below 3x10-7 they are being color correctly and those below 2…
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![Rplot01](https://github.com/user-attachments/assets/59705cf3-b149-458f-8b64-8aeefee99b76)
I tried to revise the color in the Manhattan plot, but not successful. By default, the colors are repeate…
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### Contact Details
sonja.rajic@tuni.fi
### Scripts
03g-perform_positive_control.sh
### What happened?
03g doesn't run fully, output is below
I can't upload 03g because some files are missing, I…
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### Feature Proposal
Hi,
Have any of you ever implement Manhattan or QQ (Quantile-Quantile plot) in chart.js? I have to implement both charts and can't find any solution / npm / idea. Can you help m…
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I am trying to make manhattan plots of yeast genomes. To reduce noise I have attempted to create a strict mask for the Cerevisiae Saccharomyces genome. However, when I try to calculate histograms with…