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Zkusit vzorek AED_106 (https://amtdb.org/sample/AED_106) prohnat pipelinou a porovnat výslednou mtDNA sekvenci s tím, co máme v databázi. Raw data vzorku: https://www.ebi.ac.uk/ena/browser/view/SAMEA1…
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Hi,
I am trying to run mtdna server by installing it offline, however i am using nextflow first time. i am able to install the process but encountered with the error:
ERROR ~ Unable to parse con…
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**Is your feature request related to a problem in the current program to new available techology or software? Please describe and add links/citations if appropriate.**
We currently export AD for ref …
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Hi,
Sorry for keep bothering you but I have encountered another issues, which "count.tab" file does not include all the samples' results analyzed.
It is weird to me because each output folders/fi…
FL512 updated
2 weeks ago
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Hello,
I ran cellsnp-lite with the following command for calling variants in mitochondrial transcripts in 10X scRNAseq data and for each of three independent samples, received 16,299 variants, which …
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Hi @danieljrichard, thanks for sharing this. Overall, I think the experiment looks good, and I can vouch for the workflow and clone calls. A few things to think about:
- I'm curious what the CellRa…
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## Bug report
Using storeDir makes the pipeline crash complaining that the required output file is not there any more.
### Expected behavior and actual behavior
In past storeDir was copying…
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I used rCRS (NC_012920) as mtDNA reference sequence and received error as "Invalid fasta format: sequence size == 0". I also tried reference sequence file "chrM.fa" from MToolBox, and received same er…
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Dear friends,
I have got a question from a reviewers regarding % of mtDNA reads of the total sequence reads that mapped to the whole mtDNA in MITObim. Where I can find this information in MITObim o…
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Hi everyone,
I want to create a database with all sequences of mithocondria from insects, like this:
```
haystac database \
--mode build --mtDNA \
--query '("Insecta"[Organism] AND …