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**Background**
The script addon.py already have functions for preprocessing, normalization, clustering, cell type prediction, gene list for cells/tissues, gene expression per cell types, DEG per tiss…
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**Operation name:** < multiomics data integration >
**Short description:** < Integrate or combine multiple omics data of same or different type >
**Parent URI(s):** < http://edamontology.org/to…
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Hi @rargelaguet ,
I am using MOFA2 on bulk omics data integration. I would like to test how well it generalizes on unseen datasets.
I wanted to make sure if I am doing it properly and get any com…
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Hi,
I found the list missed some recent papers:
>[Multimodal Integration] [2022 Nature Biotechnology] Multi-omics single-cell data integration and regulatory inference with graph-linked embedding
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In the following issue #671 we discussed the major changes for SDRF specification during the next release 1.1. One of them, is the extension of SDRF for metabolomics.
> **GOAL**: The aim of adapti…
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I really like your method. I would like to use it on my dataset. I have multi omics data in four different csv files. . From paper, its clear xi are generated as: pool all the feature in one matrix
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From proposal:
Integrating new microbiome data types
Through discussions with users, we learned that there is a desire for the NMDC to house new data types, specifically data types that do not fit…
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When running the vignette [Use landmark annotations to align multiple -omics layers](https://spatialdata.scverse.org/en/stable/tutorials/notebooks/notebooks/examples/alignment_using_landmarks.html), I…
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For loading of the PyMT data into the pipeline, we need to do the following:
1. Define a way to flexibly specify the experimental design, e.g. whether it's a case-control study, which comparisons t…
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Hello,
It is a question not related to git but most to the algorithm of MSNE.
You mention that MSNE is not comparing the edge weights between different networks, but this is important no?
What is…