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Hi,
I use the following code to create precomputed files from a list of `.tif` images:
```python
import os
import numpy as np
import tifffile
import imageio.v3 as iio
from PIL import Image
I…
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Hey @mrbuche
I may have mislead you earlier... I was reviewing some literature, and found that there is convention that if a seed lies on the boundary of a cell, it is considered "inside" the cell i…
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Hi Folks,
I'm working through the example notebook **binary segmentation (camvid).ipynb**, and I've made good progress so far. However, I'm encountering an issue when trying to fit the model.
The …
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Hi Nanostring team,
I came upon this repo while looking through your available modules. I am currently working with CosMx data and have opted to using Baysor at the moment for resegmentation. I was…
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I have run into an inconsistent bug where if the Dataset Name field has been used previously, even if not accessible in Data Sources, will fail to upload and hang. Here is an error message where I use…
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### Search before asking
- [X] I have searched the Ultralytics YOLO [issues](https://github.com/ultralytics/ultralytics/issues) and [discussions](https://github.com/ultralytics/ultralytics/discussion…
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Hi.
I am using mcmicro on our lab's image from Orion machine.
I am using your pipeline on HPC starting at segmentation. So far, unmicst and s3seg are working.
I am getting this error during qua…
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I wonder if I performed cell segmentation using SAW7.1, should I refine cell segmentation using stereopy. Thank you very much for your time !
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Re: https://github.com/x-atlas-consortia/hs-ontology-api/pull/138
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# Glioblastoma Phase Contrast Cell Segmentation (U-Net)
Bioimage.io -- an AI model repository for deep learning.
[https://bioimage.io/?tags=deepimagej&id=deepimagej%2Funet2dglioblastomasegmentation]…