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Hi,
I am using eggnog to annotate metagenome assemblies that contain all domains of life. I want to exclude Eukaryotes from my analyses. It seems that there are multiple ways to do this using --ta…
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Dear authors! Thank you for the program. Is it possible to realize identification of eukaryotic viruses from contigs bypassing assembly?
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Dear RAPT developers,
The documentation explicitly says that RAPT handles bacterial or archaeal reads, but I wonder whether fungi reads (even being from eukaryotic) can be processed also. Thank yout …
mglgc updated
3 years ago
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**Is your feature request related to a problem? Please describe.**
No log file is created when running CORGI, if no `--csv` is specified, the output is not saved.
**Describe the solution you'd lik…
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Although the version of QUAST version available online (http://cab.cc.spbu.ru/quast/) states it is 5.0.2 it seems to be still running BUSCO 3.0.2 (Current 5.3.0) and the odb9 (Current odb10) datasets …
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Dear Authors,
OrthAgogue is a really useful software, specially in terms of its speed for
generating orthology relationships in large datasets. My compliments! I ran
OrthAgogue on a large datas…
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Hello,
I noticed that some of the genes I have were assigned to eukaryotes as a result of diamond blastp, but when I used eggnog-mapper they were assigned to prokaryote orthologous as a result of e…
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Hi,
Thank you for your work on whokaryote.
I have encountered a bug when whokaryote is run on very small MAGs without any valid features identified. A bit of an edge case I know.
The error arri…
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In running a CONSTAX job on the MSU HPCC there were some strange results in taxonomy assignment. For details I do have to give that I suspect may be relevant, I had the job train using the UNITE gener…