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@percyfal has applied bio2zarr to a spruce dataset, and it would be an excellent addition to the paper as a further case study.
A notable thing about Norway spruce is the genome size (19Gbp). AFAIK…
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This is, I suspect, a tricky one, but it would be cool to add a bar representing the genome when drawing a subset of nodes using `draw_node()`. This would have to show only the breakpoints present in …
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Indexing onion/garlic genome failed since the genome is 16Gb and two chromosomes are longer than 2.1 Gb.
Does BWA has a limit for sequence length?
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Hi,
First of all, thanks for this amazing tool. Not only, it is fast but is structured so well that it is a joy to use.
This is from your comment in anchorwave repo. I have multiple pairwise MA…
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Is there a straightforward way to get strand information for the bedGraph or coverage files produced by Bismark, without generating a genome-wide cytosine report? I would like to avoid that for runtim…
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### Description of feature
only on the production branch please
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I have a couple hundreds of single amplified genomes from single cell assemblies which have low completeness (completeness
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https://github.com/labgem/PPanGGOLiN/blob/83c7d75d2b76df6ba2de8d855cdc281e108e5bba/ppanggolin/figures/ucurve.py#L42
It looks like the chao is using gene families that appear in zero genomes as F1 a…
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@Midnighter requests at https://github.com/SBRG/bigg_models/issues/368:
Many models in BiGG are currently annotated with a taxonomic identifier and a reference to the model itself, for example, as …
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Hi,
I used short and long-reads to assemble a bat genome. I used pomoxis to assemble it using a reference, and I got 98 contigs. Busco score was 97%, I then mapped the reads back to the assembly, man…