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``` r
library(tidyverse)
library(epidatr)
library(epiprocess)
#>
#> Attaching package: 'epiprocess'
#> The following object is masked from 'package:stats':
#>
#> filter
cce %
mutate(…
-
```
Tags are not nested correctly for example the output
influenza virus
This is because the system can't distinguish between some end tags, this is
partially a problem with XML
```
Original is…
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Liebe Nutzer:innen,
am 23.10.2024. wird es eine Anpassung dieses Datensatzes geben. Hintergrund ist, dass an einigen Kläranlagen seit Oktober 2024 auch Influenzaviren im Abwasser erfasst werden. Da…
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[Flu](https://gwu0.sharepoint.com/sites/GlyGenTeam-GRP/Shared%20Documents/Forms/AllItems.aspx?csf=1&web=1&e=EACW7c&cid=aba533af%2Dff65%2D4b17%2D8c9a%2D5c21f48836db&FolderCTID=0x01200081407FA815A7124E8…
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### Label
bug, gempyor, invalid
### Priority Label
high priority
### Describe the bug/issue
This issue is related to #298 and confirms that when a disease state given to gempyor in a `proportiona…
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- [x] In report words not found some seem to be because words that are hyphenated are not detected e.g. avian influenza ( in v11)
- [x] There is duplication of page numbers in the final index, see i…
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# Detect SARS-CoV-2 virus using Near-infrared spectroscopy – Hefnawi 🦙
A work in-progress that started on 25 March, 2020. Prologue Near-infrared spectroscopy (NIRS) is nothing new, however, it&rsquo…
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Create demographics table showing age ethnicity and at risk conditions by influenza season
For at risk conditions, goal is to show how many pregnancy did the woman have 0, 1 or 2+ at risk condition…
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I worked a bit on the labelling matching with ENA / NCBI as I had a lot of mismatch issues with the development of the FAIR Data Station. I forked the repo and did an analysis on the terms in MIxS and…
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Running in a virtual environment.
Set `PANDEM_HOME` to `ps-data`
The absolute path of ps-data is `/home/user/sites/pandem2/pandem-source/ps-data`
In `storage.py` line 76
```python
def read_…