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I was thinking of making more changes (below) to the DiffBind wrapper (as I can get the time). @zfrenchee as your group has made requests previously for modifications to this tool are you (or anyone e…
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## Day 1
**Good**
* 13x plots
* having examples of different plot types
* overlaying geometries
* 5x all clear/great/nothing bad to say
* 4x good atmosphere to ask questions
* 3x go…
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Hi! I have been using `scanpy` and `anndata` and start noticing potential difficulties as we analyze more complex datasets.
### Problem
There can be a ballooning number of implicit dependencies …
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I have proteomics data from three cell lines, each of which was exposed to two conditions (control and a drug). I've followed your vignette through normailzation and differential enrichment analysis, …
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Description:
Use graph output from ndmg on Healthy Brain Network MRI data to perform feature learning with various deep learning techniques.
**DoD**:
- Pipeline that takes ndmg output on MRI g…
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Thanks to @georgerichardson we have an explained variance visualizer for PCA decomposition. This needs to be wrapped up as follows:
*Note to contributors: items in the below checklist don't need to…
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Please ask any questions about homework 7 here.
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For GTEx V7 data we've done imputation and rna-seq normalization, and we have PCA analysis results from Broad. PEER analysis is still running. Once we have the result we should have the material to do…
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https://docs.google.com/document/d/1QsKT300QRSah_09pjW3zobDtmofwyONPkuJiXADhtUc/