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I run the trackmate in the macro script as follow:
run('TrackMate', "use_gui=false "
+ "display_results=false "
+ "radius=2.5 "
+ "threshold=10 "
+ "subpixel=true "
+ "median=false "
…
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Create a converter for [btrack](https://btrack.readthedocs.io/en/latest/) output files to the cell tracking challenge format.
## Output files
Btrack outputs to an HDF5 file containing various outp…
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Could you write down a short step-by-step guide to install the plugin?
I tried Fiji -> Plugins -> Install Plugins using the TimelapseReg_.java in the src folder.
I get TimelapseReg as an option …
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Would it be possible to have a command line interface for this?
I am asking egoistically: This would make it 'easy' to include this work in TrackMate...
Totally understand if it is not a priority…
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The OPS library is focused on image processing, and as such it would be best if the front-facing example script did more than gimmicky operations. Rather, it should perform a really common and useful—…
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I am running Trackmate on a dataset of live cells and it is combined dataset which contains raw phase-contrast miscroscopy data in one channel and its corresponding segmentaion in another channel appe…
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1. Output files (pdf) are empty
2. Output file naming could mention Origin_Normalized_Tracks
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Hello @ppouchin,
Do you plan to make an update site with the OMERO simple client ? I know the installation is easy with a single jar, but with an update site it's possible to install it from the c…
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dialog for rolling windows missing on Trackmate and custom notebooks for Calculate the Spatial Coverage.
 the notebook prints text: . It is unclear what this means.
2.…