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**Describe the bug**
Originally reported by @mihailefter.
VariantValidator doesn't handle the mapping well from transcript to genome around a gap in `NM_017680.6`.
Bases `NC_000009.12:g.92474743_…
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We get a "Co-variant array conversion from Transform[] to Object[] can cause run-time exception on write operation" [warning](https://www.jetbrains.com/help/rider/CoVariantArrayConversion.html) when u…
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参照Gradle7的文档中的描述，需要替换注解：
```
Incorrect use of the @Input annotation
This error indicates that a property is annotated with @Input, but that it should be annotated with @InputFile or @InputDirectory…
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**Bug Report**
This is a follow-on from https://github.com/python/typeshed/issues/7739. See there for additional context provided by @srittau and @AlexWaygood.
**To Reproduce**
```python
fro…
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We could allow `#[P = 0.45]` annotations to allow setting the probabilities for enum variants. The variants without annotations divide the remaining probability under themselves.
We should raise an…
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It should be possible to supply a VCF file of structural variants for each sample. If nothing is given, the workflow should behave as it is at the moment, otherwise the structural variants should be a…
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Hi,
I am currently attempting to perform an association analysis on noncoding regions using WES data. However, while executing 379 array jobs, some of the jobs failed with an error. Could this iss…
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Suggested by @ngie-eign
https://github.com/libevent/libevent/commit/0499c5175369783aa5517007ff3607c80e94b339#commitcomment-147458908
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Hi,
After we called variants using the GATK pipeline, is there a way to annotate the variants as synonymous or non-synonymous using ORF annotations generated by Transdecoder?
Thank you so much!
Shu
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I need to create a custom database where a variant can have zero, one, or many annotations.
For instance, I need an output like this:
```json
{
...
"variants": [
{
"vid": "17-…