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If I understand correctly, poly_csubq is not required for compressions. The reason is that, in the current avx2 implementations, the floor variant of Barrett reduction is used instead of the rounding …
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I'm trying to load a IIIF source from archive.org which is currently not available.
```
{
//...
sequenceMode: true,
timeout: 5000
tileSources: [
"https://iiif.archive.org/iiif/romanummuseumsi…
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I have encountered the following error. I have tried both with out without --save_output_as_bam. It didn't help. I also ensured sufficient memory (256G) is available.
Thank you!
```
_-[nf-core/…
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# Feature Stage
- [ ] Feature released
- [ ] Tracking feedback
- [ ] Installation API (HELM) - TBD
- [ ] Enabled By Default - TBD
# Getting help
If you are having an issue with the feature…
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I have assembled a single haplotype and aligned it to the hg38 reference genome. Then, I used SVision to call structural variants (SVs). When I called SVs using each haplotype separately, both haploty…
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I aim to detect a variant at chr5:51902807 in 1,700 bam files (It is a rare variant; AC
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Currently I am using following command to call variants using samtools/bcftools.
`samtools mpileup -d 1000000 -L 1000000 -uf ref.fasta sample.sorted.bam | bcftools view -vcg - > sample.SAMtools.vc…
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Following the instructions, my IGV (2.3.72 does not look exactly like the image) It's possible I haven't followed instructions thoroughly, but posting in case others can confirm or deny. [](url)
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**Is your feature request related to a problem? Please describe.**
Every time i open my pc, when certain applications update, they automatically change back icons to their original state in which i d…
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### Description of the bug
Dear All,
I launched the variant calling step using the ASCAT tool, but I received an error message that I did not understand. Could you please help me resolve this issu…