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* https://github.com/PacificBiosciences/actc
* https://anaconda.org/bioconda/actc
* https://quay.io/repository/biocontainers/actc?tab=tags&tag=latest
```
actc - Align clr to ccs reads.
Usage:…
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If I have multiple bam files (replicates), how ```bamCoverage``` work?
There used to be a function ```multiBamCoverage``` but it has been removed from the latest deeptools (3.5.5).
How do you sugges…
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./calmeth -b KB1_pe.sorted.bam -m KB1 -Q 20 --remove_dup --coverage 4 -nC 1 --Regions 600 --step 50000 -g 60_C_idella_male_LG.fa
BatMeth2::Split v2.0
Coverage and validC: 4 500, 1
Load Genome.. 60_…
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# Update May 28th
Today, I was able to complete the pipeline up till deseq2 or possibly featurecounts. The Star script is finished, and now, within the Star rule, I am using samtools to separate th…
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While the pair syntax is helpful, if you have three or more arrays you're trying to zip, the syntax gets pretty messy.
For example, right now I can do:
```
scatter(pair in zip(zip(sample_bams, …
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Hi,
I am trying to run braker2 using pfalciparum models and my RNASeq dataset for additional evidence.
However at the optimization step, `optimize_augustus.pl ` is throwing out an error
The…
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We have a few paired samples that for some reason have different platforms in each bam of a given pair. As a result we got the following error:
```
BAMs have different sequencing platform: ILLUMINA,…
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Hi @dg520 ,
Hope you are doing well :)
I have been trying to use IRFinder on BAM files generated by cellranger to quantify IR. On doing so, I get the following error :
```
WARN: This sampl…
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I am trying to run a TBProfiler 4.2.0 analysis on our Linux HPC cluster using trimmed, aligned, and deduplicated bam files as input (-a option). All of my runs have been failing at the delly analysis …
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**Describe the bug**
When clicking the eye icon of a BAM dataset, only the SAM header gets displayed instead of the SAM view of header and body as used to be the case previously.
This will likely …