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As a clinician or researcher, I want SNVs to be annotated, ranked and compatible with Scout.
# Suggested approach
Multisample/case_id vcfs are annotated, then split after annotation.
#### Annotate …
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Hi there,
I run an ifc validation against ids file (success as per attached image) and now I'm trying to exporting the report to the various formats (ods, json, html, bcf) but with no luck.
I'm runn…
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Hello! zheng
I encountered some issue while utilizing PART_run.pl. I utilized my custom-prepared VCF file, derived from aligning NGS data against the pan-genome using VG. I think it is achieve a wo…
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computation with active SVD works like a charm
```
(qiime2-amplicon-2023.9) rs500-bcf-01 x86_64 ~/MicrobiomeAnalyses/Projects/Pandyra_CBP_Mb1-Cre>qiime gemelli tempted-factorize --i-table tempted_co…
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Reported by @eliottBo
Hello, I am trying to upload a MAF plate to genotype but I get this can I have some help? (my VPN is working fine for the rest)
![image](https://github.com/user-attachments/a…
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using
- #33
version
```shell
❯ time ls
CONTRIBUTING.rst README.md pyproject.toml setup.cfg smoke-tests.sh* src/ test/ test_logs.py* test_script.py* tox.ini venvs/
LC_COLLATE=POSIX …
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Read description and important instructions below.
You can download the JSON file (in .zip file below) and import to your graph, or simply copy/paste code below.
[Bulk processing - Find & Replac…
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@beachtom @rickmakkinga @pasi-paasiala
I think the Results API payload should be based on BCF XML, or preferably BCFowl.
- Paasi, can you add some refs for BCF?
- There are 3 recent papers on BCF…
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_Note: Specific regions were substituted by ``, `` and `` to hide sensitive information. Real usage did not contain brackets._
After combining region of interest locations with `bedtools` to build …
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*Please see [TeX StackExchange question \#648865](https://tex.stackexchange.com/questions/648865).*
## Steps to Reproduce
1. Run `docker exec -i sharelatex tlmgr install biblatex…