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Hi Raymond,
Thanks so much for providing this tool. It worked great.
I was wondering if the same could be done for long reads, more specifically Oxford Nanopore?
Thanks :)
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The VRS 2.0 specification uses a property (`ga4ghDigest.keys`) to indicate keys that are used in creating VRS computed identifiers. This has the same functionality as the SeqCol `inherent` attribute.
…
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### Expected Behavior
Probability of pairing $p_i$, calculated as a sum of all pairing probabilities $p_{ij}$, should not exceed unity, $p_i = \sum_j p_{ij} \leq 1$.
### Current Behavior
For longer…
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I was taking a look at database matches among the three species and noticed something odd. All three species have miRNAs with database matches to publications of mir-2030, but that was *not* one of th…
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### Is your feature related to a problem?
Some reads are inevitably thrown out due to lack of barcode, basecalling errors/below Qscore threshold, etc.
### Describe the solution you'd like
If you ha…
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`Bio.codonalign` was added to Biopython about 8 years ago. Currently this module is still considered to be experimental, and prints a `BiopythonExperimentalWarning` when imported:
```python
>>> fr…
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[Google Doc](https://docs.google.com/document/d/19dUZhTP4QIiq7IsSATotQoN9GKf95p4qtx1hGyOSNjA/edit)
## Primer General Requirements:
### Sanger Sequencing Primer:
Example of good primer: **GCATAC…
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**Request on behalf of our Galaxy user**
--
Dear Galaxy Europe team,
I recently found out that the usegalaxy.eu server
has the tool CPAT (link:
https://usegalaxy.eu/root?tool_id=toolshed.g…
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### Contact Details
sd20163818@snu.ac.kr
### What happened?
Hi.
I'm trying to run RNAfold on presumably 'circular' RNA sequences. I ran it on about 400000 sequences (fasta file), but the RNAfold r…
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### Setup
I am reporting a problem with:
- Biopython version: 1.81
- Python version: 3.9.0
- System: macOS Sonoma
### Expected behaviour
```
from Bio.SeqUtils import gc_fraction
gr_frac…