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Hi, I'm using pbsim2 for my Thesis to test performance of aligning long reads tools, and I was searching a method to obtain sam file instead maf.(In the same way simlord do for instance). I've seen th…
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I have encountered the following error. I have tried both with out without --save_output_as_bam. It didn't help. I also ensured sufficient memory (256G) is available.
Thank you!
```
_-[nf-core/…
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[GLIMPSE2] Ligate multiple output files into chromosome-wide files
* Authors : Simone RUBINACCI & Olivier DELANEAU, University of Lausanne
* Contact : simone.rubinacci@…
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Hi Jody, i am trying to integrate tb-profiler 6.3.0 in our WGS pipeline, but i cannot get it to run as a standalone package. I have pulled the latest singularity image from bioconda and i get the foll…
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Hi,
I want to test dragmap (currently I'm using Bwa mem2) but I get an error.
First precision : I use dragmap with a Conda env, the last version.
Command used:
```
dragen-os \
-r ${REF_Gen…
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Hi, this is my first time using this repo, so I was wondering if anyone has encountered this issue before. I'd like to download the `Salmonella_enterica_1203NYJAP-1` set of reads and assemblies for us…
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When reading geometries won't be loaded properly and calculations will be wrong if the order of lat/long isn't correct. So `flip_coordinates` should be used.
In the short term, maybe give it its own…
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Hello,
Thanks for the awesome software!
I wonder is there any way to measure imputation quality on a per-sample basis, from the output of GLIMPSE1? I already filtered out all variants with INFO…
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**Describe the bug**
uploading a regular json file from germany not working
json file created with mapshaper.org
**To Reproduce**
Steps to reproduce the behavior:
1. start kepler.gl
2. add dat…