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* [x] Measure n_taxa [n_taxa.zip](https://github.com/richelbilderbeek/wiritttea/files/769371/n_taxa.zip)
* [x] Add n_taxa to data set
* [x] Measure ESS: fails, first takes hours for one file, the…
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See the discussion [here](https://github.com/biocore/songbird/issues/166#issuecomment-1518491954).
Option 1: adjust the "system requirements" section (maybe put this beforehand, and just have the s…
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It seems that the results of `getRDA()` function are somewhat incorrect. First of all, it does not return "loadings" as the "rotations" are empty. Moreover, the function seems to try to add "species s…
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Dear @cameronmartino and other developers of DEICODE and Gemelli,
Due to the DEICODE Github is being replaced by Gemelli, I also post here although my original comment can be seen in:
https://gith…
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In R_block_11, why the variable used in y axis is perb.rare@matrix, I would think if the expected rho value should be plotted rho.rare@matrix should be used instead.
Also, I was a bit concern about…
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Using gemelli (0.0.11)with CLI Qiime2 (2023.5). Running my raw counts table after clr tranform
```
qiime gemelli tempted-factorize \
--i-table clr-table.qza \
--m-sample-metadata-file meta…
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Thanks a lot for this really awesome package.
Is there a way to put a cutoff in term of correlation or projection to the variables to select only part of them when using plot(fit, type = "cor_circl…
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Hi Benjamin,
As I told you before, I'm encountering an error while creating the 'df_mu' object using nichetools and SIBER. Here is the error message:
Error in extract_mu(ellipses_posterior, pkg = …
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### Description
Display PCA results with a biplot and loading vectors
### Purpose
To make a conventional display of PCA results possible
### Use-case
_No response_
### Is your featur…
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I am not sure if there's a solution, much less one that could happen at the unconf. If it's just a lament, we can close this and move on. But the discussion on #69 has this on my mind and maybe some…