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# Pancreatic Phase Contrast Cell Segmentation (U-Net)
Bioimage.io -- an AI model repository for deep learning.
[https://bioimage.io/?tags=pancreatic&id=10.5281%2Fzenodo.5914248&type=model](https://b…
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I am having troubles with data conversion into a Seurat (or RDS) when I rerun segmentation.
I start with a D02168B3.adjusted.cellbin.gef and run
`conda activate stereopy3_8
python
import ste…
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I followed the instructions in the document at https://keras.io/api/keras_cv/models/tasks/deeplab_v3_segmentation/ and encountered an error when I input the following code:
```python
from keras_cv.m…
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## Bug description
Running nuclei segmentation on H&E stained images used to work with cellpose `v2` (tested with `v2.2.3` and `v2.3.2`) but does not work anymore with cellpose `v3` (tested with `v3.…
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Hi, I am trying to use the crop function on my data but it is giving the following error
```
> basal.crop head(coords)
x y cell
1 -36765.44 130532.4 C16.S1_39_1
2 -367…
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In the baseline code following code section
```
output_file = f'{OUT_DIR}/raw/file_map.dat'
output_info = joblib.load(output_file)
semantic_predictions = []
composition_predictions = []
for in…
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Hi, I am ex=ncountering this error while stardist image processing. Any idea what might be causing this error?
Traceback (most recent call last):
File "/rsrch5/home/neuro_rsrch/apirani/2024_11_0…
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@katyb @bherr2
I am adding this GH issue so we can track this feature request for the future.
From Yash:
Hey Andi, there are two different sources for protein biomarker expression values for …
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Models to identify patchable cells from brightfield or fluorescent images
- Something like cellpose, but perhaps we don't need full segmentation; only cell centers
- Ability for user to create and tun…
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@timtreis asked:
> just wanted to follow up on the segmentation of JUMP. We’re running a small study right now to identify the optimal CellPose parameters for the U2OS cells and would then segment …