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The field `display_consequence` present in the current endpoint is used to add colours the features. Could you please look into adding it to the new endpoint as well?
Ensembl REST endpoint:
https:…
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Hi Bryce and Graham,
I plan to use WASP with input file of `combined_test.py`/`fit_as_coefficients.py`/`fit_bnb_coefficients.py` prepared by myself. So that I am looking into files at `examples/exa…
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The type of the value field is currently Float but it is returned in negative log 10 style in the current endpoint. Could you please update the new endpoint to match with the current?
Ensembl REST …
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Hello,
Just as a followup to this [thread](https://github.com/stephenslab/mashr/issues/69), when you say the strong set was the lead eQTL for 20,000, do you mean within a tissue or amongst all tissue…
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We are trying to use your tool to detect eQTLs in single-cell data, where we have done initial eQTL mapping across different conditions.
In our dataset these conditions are different stimulation cond…
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Extend quality control and standardisation to QTL analysis. Following checks are specific to QTL studies and need to be added:
* Allow for duplicated SNPs
* Check effect region/gene region
* Conv…
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Please note - details below are going to be discussed in person next week.
See [here](https://genetics.opentargets.org/study/GCST002222) for current Open Targets Genetics study page.
- [ ] Scenari…
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Hi,
Thank you for developing this interesting method for TWAS analysis of multiple correlated outcomes. I looked at the example provided based on simulation data. I have GWAS summary data (also have…
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I have been trying to set up eCAVIAR and getting it to run on the sample data. Unfortunately, I get an error message that doesn't help much and the website for documentation is not available.
This …
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Hi I am running this:
result result