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https://metabolomics-usi.ucsd.edu/mirror?usi1=mzspec:MSV000078836:T250-3-EA.mzXML:scan:1083660&usi2=mzspec:MSV000084314:MSV000078836.mgf:scan:44259&mz_min=50&mz_max=500
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The deconvolution workflow is failed for GCMS files from SPME measurement.
Please see the details follow the link here:
https://gnps.ucsd.edu/ProteoSAFe/status.jsp?task=ad5e7fd3fd1f4347a2a1162eb97…
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The deconvolution process is successful after change the name to text.
But the networking is failed, here is the error message:
https://gnps.ucsd.edu/ProteoSAFe/status.jsp?task=3199605b1d29406c82c…
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When adding a spectrum for annotation, there is a list of adducts but this list is not complete. Maybe we can add "other" as an option for more rare adducts that we might want to annotate in GNPS...
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The Alignment ID of MS-DIAl export alignment of GC-MS started zero, however, when uploaded to GNPS for analyzing Library Search/Networking, the hits started from one. This will change the ID, Be atten…
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Big discussions on integrating raw data over the weekend:
https://github.com/MassBank/MassBank-data/issues/79
https://twitter.com/martiwag/status/1145011749554393089
To do this properly we'd (@t…
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Command line works as expected:
`singularity exec --writable-tmpfs instance://reclusive_cat_2780 sed -i 's/REPLACE_THIS_LINE/ \/Work\/III_mzML\/Dorrestein_GnPS_P14_G10_7V_Rep01_Neg_29Dec20_Fij…
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To resolve #467, we need to add platform-specific GNPs to block access to metadata servers on cloud platforms. Currently, we don't have a good way to manage those manifests.
E.g. for Packet, we hav…
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Hi Ming,
It seems the Qiime2 Emperor plots are not working for this feature-based MN job. I'm not sure if it could have to do with the formatting? It's a feature table created from XCMS:
https:/…
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@aclum and @sujaypatil96 I thing we could link some additional issues here
goals:
- make sure we all understand the difference
- make sure that both aspects are handled well in the schema for p…