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JOSS requires the software paper to include the following elements:
- [x] **Summary** of software: While your summary section is a great motivation for why coarse graining is needed, it does not de…
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http://igraph.org/c/doc/igraph-SCG.html
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Hi
Thank you for providing the code. but I have a hard time figuring out how to run it on two proteins of interest. there are many .sh and config files.
could you tell me which file with which para…
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JOSS asks for a statement of need in the documentation. This statement should state what problems the software is designed to solve and who the target audience is.
https://github.com/openjournals/j…
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I'm starting to poke around in mbuild's coarse graining capabilities. Did the coarse graining stuff use to include things like 2to1 or something?
I actually really like the direction coarse grainin…
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Hi,
Thanks for your paper and the code. Could you provide an example showing how to dock two proteins where both are pdb files?
Thanks!
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I have DNA origami pdb file that I converted/coarse-grained to oxDNA file using tacoxDNA scipt (PDB_oxdna.py). The oxDNA structure has stretched unphysical bonds after coarse-graining.
I'm incredibly proud to announce Comple…
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**Submitting author:** @bastorer (Benjamin Storer)
**Repository:** https://github.com/husseinaluie/FlowSieve
**Branch with paper.md** (empty if default branch):
**Version:** v3.0.0
**Editor:** @kthyn…