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Hi! Similar to the [CAPICE GRCh37 precomputed scores in Zenodo](https://zenodo.org/record/3928295), I would like to know if you intend to publish GRCh38 precomputed scores in the near future. Thank yo…
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Hello,
I am requesting for your help on this. I am running a common variant association analysis with variant tools using docker. However, all the association tests are failing. I wonder what could b…
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Dear CliqueSNV team,
I've been experimenting with your tool and think perhaps I have found a bug. If there is a single, isolated SNV with no other SNVs in linkage within the mapping reads, i.e. dis…
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Can medaka generate a consensus that extends from the soft-clipped 3'end of ONT reads mapped to a reference?
E.g. for B-cell repertoire or T-cell repertoire transcript sequencing with ONT, one can …
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"This resource consists of mouse sperm lines for ENU-induced single-SNV mutations across more than 10,000 genes. In total there are over 250,000 SNVs that have been computationally predicted for effec…
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### Description
At the moment there's a bit of a mix in the use of tmp dirs in the rules in our snakemake workflows. Some rules have this in params:
`tmpdir = tempfile.mkdtemp(prefix=tmp_dir) `
And…
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Hi,
I am currently working on identifying clonal types in my DLP library using mitochondrial variants, and I would like to use your runmtclone.py script (referred to as MityBayes in your paper, I b…
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Hello,
I have found the following name inconsistency causing the `garmire_SNV_calling/deploy_star.py` to fail:
```
Traceback (most recent call last):
File "garmire_SNV_calling/deploy_star.py", l…
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Hi Dr. Feng, when detecting minor SNVs, the program runs but does show a message of "igda_pipe_detect_ont: line 114: [: missing `]'". I looked into line 114 of igda_pipe_detect_ont, and it calls a $au…