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Hey,
I'm trying to run the following in terminal. I'm in my subject folder, and all of my paths are correct.
nifti2dicom -d ./DICOM/PA000001/ST000001/SE000001 -n ./bids/derivatives/sub-iai343y_ses-2…
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Create a wrapper around BrkRaw https://brkraw.github.io/ to allow for the conversion of Bruker raw files into the BIDS format directly within RABIES, avoiding the need for users to manually handle sep…
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Since the BEP brings together a lot of diffusion domain-specific expertise, I suggest the team can develop a consensus on the (potentially ambiguous) existing diffusion details of the BIDS specificati…
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I was working on a preprocessing script to crop the images using the spinal cord masks as the reference and came across a minor discrepancy in the names of the (image, label) pairs in the BIDS-formatt…
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### Describe the new feature or enhancement
To my knowledge, there is no way to display source space(s) in the MNE `Report`.
I would be nice to be able to quickly visualize the source space distribu…
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# Snakebids: Reproducible neuroimaging workflows as BIDS apps
***By Tristan Kuehn, Jason Kai, and Ali Khan, Western University***
### Preferred sessions: Emergent Session #2 or Emergent Session #5…
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### Related problem
> An example output from running the default config is:
> ```
> sub-0050953_ses-1_task-rest_run-1_atlas-Yeo-7-liberalspace-MNI152NLin6res-1x1x1_desc-ndmg-2_correlations.csv
> `…
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### Description:
When running `sam build --docker-network host` I am expecting the Docker container that is under build to use the network specified by the `docker-network` flag.
### Steps to repr…
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Dear developers,
I am trying to run micapipe on my datasets. I manage to get through -proc_structural, -proc_surf, -post_structural, and -GD. However, I face an error for both of my datasets at -pr…
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Talking with @louisfb01 I realized that the lab does not have a procedure for training MONAI models from BIDS dataset, and instead convert the data physically, which is problematic because:
- ~it dup…