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Hi Vadim,
I’ve been running into this issue, raw files acquired from Orbitrap Astral are not loaded by Diann, no matter it’s 1.8 or 1.9 version/1.9.1 of diann. It happens occasionally, not for all …
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### Description of feature
Instead of attached on specific statistical test to a workflow, let them run on any the generalized stand_pep/stand_prot files, then providing an updated version of these f…
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Hi
I am just starting to use DIA NN. It has been producing great results for us when we did cell lysate.
I recently did a project with in vitro phosphorylation. I have 4 samples. A and B were mo…
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**Describe the bug**
Some row entries are 0 for all replicates in the CustomDf.aq_reformat.ion_intensties even though there are valid values in the original CustomDf.aq_reformat input dataframe. Furt…
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[log_2024-10-28_18-13-57.txt](https://github.com/user-attachments/files/17559065/log_2024-10-28_18-13-57.txt)
I'm trying to analyze two DIA datasets in the same Workflow and although the DIA-NN qua…
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Hi, great tool!
To make it even better, it would be nice to also support protein level result export to .txt/.tsv, as is implemented for the peptide level table.
at least pFind.protein cannot read…
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Thank the developer for providing so a fantastic tool for DIA data analysis.
I want to request two features of DIA-NN.
1. The number of peptides of identified protein in protein intensity matrix.
2…
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Dear Vadim,
I hope you are well. I have used your software successfully many times for SWATH data. This is my first time using it for diaPASEF data. I initially loaded it up with variable mods in th…
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Running the example files through quandenser works fine, but I've ran into a problem when trying to run on a new dataset.
Specifically, when aligning runs, some messages to stdout return as: `Align…
asalt updated
5 years ago
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### Description of the bug
```
ERROR ~ Error executing process > 'NFCORE_QUANTMS:QUANTMS:LFQ:PROTEOMICSLFQ (PXD002854-serum.sdrf_openms_design)'
Caused by:
Process `NFCORE_QUANTMS:QUANTMS:LFQ:…