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When I installed BioMedR through CRAN, got the error message for some dependencies like "fmcsR", "ChemmineR", "GoSemSim".
> ERROR: dependency '"fmcsR", "ChemmineR", "GoSemSim"' is not available fo…
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I was running the filter_rad() on a new dataset and got the following error
Filter genotyping threshold: 0.2
Number of individuals / strata / chrom / locus / SNP:
Before: 658 / 3 / 1 / 5478 /…
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need to update to newest version of Rstudio and remove call to install bioconductor package. by changing the repositories using setRepositories(c(2,3,4)), it will add 3 bioconductor repos and search t…
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Trying to install a missing genome fails because QuasR loads BiocInstaller!?
``` R
> library(kmap)
> mappable("hg38")
Error in .stopOnAvailablePkg(genome) :
BSgenome.Hsapiens.UCSC.hg38 pa…
omsai updated
7 years ago
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The command:
```bash
pyensembl install --release 104 --species homo_sapiens
```
The output:
```
2024-09-05 20:37:25,680 - pyensembl.shell - INFO - Running 'install' for EnsemblRelease(rele…
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Hi
Sorry, I couldn't find this info but is there a way that I can combine my RNA sce object and ADT sce object (from same experiment) into a MAE? We had previously exported everything as a uni-moda…
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I get an error when installing `cyCombine` via `remotes::` :
error: `ERROR: dependency ‘sva’ is not available for package ‘cyCombine’`
`sva` is a bioconductor package, so DESCRIPTION needs to po…
AbeKh updated
4 months ago
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Hi team, exciting work!
I'd like to suggest including instructions for installing dependencies with conda/mamba instead of pip. This circumvents 2 issues I encountered during installation:
- For so…
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https://marineomics.github.io/DGE_comparison_v2.html
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Hi,
The IOBR::calculate_sig_score() function no longer works with R version 4.4.0, Bioconductor release 3.19. Particularly the function calculate_sig_score_ssgsea() fails because the previous GSV…