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Hi @joewatchwell ,
I was attempting to design insulin binders of my own (following the example specifications) and then running the backbone through MPNN_FR and AF2 initial guess. I compared a poten…
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Hi,
Thanks for your awesome pipeline, which is a very useful and user-friendly especially for those just starting out in bioinformatics. Could you please tell if you plan to add the ability to use no…
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As of right now, Cartoflow only creates an output for genes whose protein product is directly binding to my chemical input. It would be great if Cartoflow included all of the gene/protein interactions…
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Currently, EmpiricalFormula is very protein/peptide centric but allows negative charges.
This issue is intended to determine requirements and shortcomings of the current design in the context of model…
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I keep getting an error message when executing the write_norm_report function.
The error reads: "Error in `combine_vars()`: #> ! Faceting variables must have at least one value"
The code I am usin…
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Git repo has grown beyond any reasonable size due to large amounts of data committed into it over the months:
```bash
$ git gc
$ du -bsch .git
1.4G .git
```
The worst offenders are
- `/…
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@tdudgeon and @alanbchristie please give us an estimate for the amount of work needed to update the deployments to use the new data model and resuscitate the algorithms
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https://doi.org/10.1101/239236 https://www.biorxiv.org/content/early/2017/12/24/239236
> Convolutional neural networks (CNN) have been shown to outperform conventional methods in DNA-protien bindin…
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Hi Anni,
First many thanks for your contribution in AMR risk assessment. It's very useful.
Here I have two questions. The first one is about Rank-IV ARGs. From our metagenomics analysis we found tha…