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Hi!
I have seen a very interesting reading using enrichplot in [Visualization of functional enrichment result](https://yulab-smu.top/biomedical-knowledge-mining-book/enrichplot.html#enrichplot) and…
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I'm following [Bassez](https://carmonalab.github.io/ProjecTILs_CaseStudies/Bassez_BC.html) tutorial. However, during classification step I encounter the following error:
```
> DefaultAssay(ref_cd8…
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Is there any way to solve the problem?
marker_cosg
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I used an annotated single-cell data from seurat, but the following problems occurred when using scgsva:
'ssgseaParam' is not an exported object from 'namespace:GSVA'
my codes：`set.seed(123) …
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AnnData --> Seurat, particularly now there is Seurat v4 trajectory stuff/automated annotation stuff/Monocl can import Seurat objects... this is important!
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Thank you for the nice tool.
I am getting an Error in Step 15 of the analysis, which I don't fully understand. The input Data is a seurat object processed with the standard workflow with 15 clusters.…
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Hello, I am trying to load visium HD data using the following command:
Load10X_Spatial(data.dir = localdir, filename="filtered_feature_bc_matrix.h5")
However, my r session is killed. The size of…
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Dear all,
I was not aware of the v5 of Seurat and the big changes with layers..
So unfortunately I integrated using the SCT pipeline as usual and I identified my clusters etc.
Then the issue …
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Hi,
I have problem in installing seurat-disk package in rstudio, and I have already installed the dependency packages listed in https://github.com/mojaveazure/seurat-disk
here is error info:
> …
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