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Hi,
I tried assembling the mitogenome of my insect species using MitoZ. The final assembly is not circular, with a size of 15,442 kb. Additionally, the following genes are missing:
l-rRNA
tRNA-…
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# Bioconda
- [x] Create a `bcalm` recipe for Bioconda @natir
# Flowcraft
- [x] Create an `abyss` component @emreerhan https://github.com/assemblerflow/flowcraft/pull/146
- [x] Create a `bcal…
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[Breaking Lander-Waterman's Coverage Bound](http://biorxiv.org/content/early/2016/06/23/060384) - assembly
[Sparc: a sparsity-based consensus algorithm for long erroneous sequencing reads.](https://w…
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I am trying to run breakmer on a 5k bed regions file but I am having the same error
`breakmer.params - ERROR - gfServer wait time exceeded ~15 minutes, exiting
`
Any idea on how to fix this ? should …
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Hi, very cool repo!
I had a small question regarding the last few bullet points in the readme workflow, as I have been thinking of implementing something similar to address the fact that most MAGs ge…
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I want to ask if I have 20X illumina corrected pacbio reads, Should I use falcon for overlap graph construction? Because https://github.com/PacificBiosciences/Bioinformatics-Training/wiki/Large-Genome…
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Here is also a short introduction for gene finding！
http://www.cs.us.es/~fran/students/julian/gene_finding/gene_finding.html
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Hi,
im running the software to assembly the human genome, i have runned one day, and it is still running,so how can i speed it? generally speaking , what memory perl thread? if i have sufficient me…
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Hello Lukasz,
I can compile it now but I have no clues how to run it. katome r1.fasta r2.fasta? what about the output? I also did not find how to run it in your original paper. Thank you very much …
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Hi @KrisKieft,
I'm trying to run some VIBRANT output through vConTACT2 and I'm curious which VIBRANT output to use to generate the gene-to-genome file. I thought I saw a file with the associations …