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I'm having trouble finding a headache free way to export bData objects or data in the bData format to nifti files such that they can be viewed with software such as fsl. I'm working with the dataset f…
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Reference to a whole website or a specific article on a website.
## User Stories
### Author
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### Production staff
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### But what if . . . ?
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### Considerations
- eLife requires an accessed dat…
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A suggestion by Brad Moffat (one of the NIF fellows):
Provide an option to build the BIDS output with symbolic links to the original raw files (rather than copy them to the BIDS directory tree). This…
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Trying to develop diffusion BIDS apps is made significantly more difficult by using the FSL bval/bvec format. A format that is dependent on the image axis (and even then only *sometimes*) means that a…
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Is there a possibility to add support for sform and qform matrices as fields within the NIfTI.NIfTI1Header type?
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If you have two nifti files with the same name in a folder but one is gzipped and the other isn't, when you load the gziped file slicer will instead load the data from the uncompressed file.
**This…
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Hello,
I wanted to confirm the steps for training a VQ-VAE on radiology data. Thank you for working on such an interesting and important application of VQ-VAE. Our research group is particularly i…
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A user informed me that this validator is failing with his t1w image that he is trying to upload.
Nibabel gives following output for this input. Please note the dim is not right..
```
object, …
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- why isn't the indexing based on the underlying format again ? [jb tentative response: because two different backends will lead to 2 different meta data json files ? yet another reason to keep backen…
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Hi,
I would like to use mri_conv to import NIfTI/json (not organized in BIDS ).
When I export the data (via the basket), the json is copied as is and therefore does not have the same format as…