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Hi,
I'm trying to run graph_peak_caller on a ATAC-seq data which is aligned to a single test chromosome graph which was generated with the PGGB pipeline. After aligning the raw data to the graph us…
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Congratulations for this nice work!
I wonder if it is possible to use SpaceFlow for trajectory analysis of spatial data from merfish (single-cell level)？
Thanks!
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Hi,
I am trying to load the spatial transcriptomics data that are deposited on GEO (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM5115019) but as far as I see, the files mapping the barcode…
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A team of engineers are trying to improve medical diagnoses in Uganda using high spatial and temporal resolution environmental factors and time-series analysis -- they've been working on this for near…
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-develop sql query like arcmap spatial analysis zonal tabulate area function for overlaying spatial data sets on lateral shed polygon
-develop module for aggregating / summarizing network watershed st…
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Hi there,
thank you for your nice work and code.
I am trying to run the `train_cvpr2023.py --config scripts/DFKD_Cifar10_ResNet34_ResNet18_V37_conv012.yaml` example on an A100 GPU. With tqdm, t…
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EODC was tasked to suggest this new dataset/service as new layer in GTIF:
[WFS EODC ](https://features.dev.services.eodc.eu/collections/)please use the "Vlbg_EGMS_L3_E" and "Vlbg_EGMS_L3_U" from th…
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How will they want to use the available data/interact with it?
This will inform discussions about the [API](https://github.com/NERC-CEH/dri_gridded_data/issues/24) and [version control](https://githu…
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Dear stLearn Team,
I appreciate your efforts in developing such an effective tool for spatial transcriptomics analysis! As I explore the capabilities of stLearn with Xenium data, I have encountered…
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Hello
I am working on multiple samples of visium spatial transcriptome data.
**-> Raw data was analysed in the space ranger and stored in the seurat object list.
Next to remove batch effect …