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Hi, I use **hifiasm-meta** to assemble [urogenital tract metagenomics data](https://openstack.cebitec.uni-bielefeld.de:8080/swift/v1/CAMI_Urogenital_tract) from CAMI.
This data was simulated by [C…
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- [ ] Suggested improvements for the dialog that comes up when you load a session file that includes a track from a local file: Add a note that local files can't be loaded - don't just ask if they are…
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My app has different fundamentals from the provided example.
**As far as I understand correctly, the provided example does the following:**
- It goes through the entire population, where for each …
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There are a lot of inputs in the config files. Find out whether you can get rid of some of them (like config-WASP in Snakefile-counts) or get the info you need from a smaller number of files.
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@castedo came up with an intriguing idea for dealing with some of our most pronounced compatibility headaches: make a new top level function to use instead of ``simulate``: https://github.com/tskit-de…
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Hi,
Thank you for developing ChromA. I have a few questions:
1. I understand that ChromA doesn't remove chrY and chrM reads (so those must be removed beforehand) but it does remove blacklisted r…
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These are the SRA accessions which are our 'representative' set. Based on the assemblies / contigs generated by each method we will decide on an implementation to use on **June 3rd**. Which means we s…
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**Submitting author:** @mjsull (Mitchell)
**Repository:** https://github.com/mjsull/chromatiblock/
**Version:** v0.4.2
**Editor:** @will-rowe
**Reviewers:** @telatin, @rpetit3
**Managing EiC:** Danie…
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It seems to me that the ability of a genome (assembly) reference are missing for NCBI, GenBank, and RefSeq. An example for [Escherichia coli str. K-12 substr. MG1655](https://www.ncbi.nlm.nih.gov/asse…