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hi Michael
Please forgive me for bringing this up again... In my defense: You said nothing is preventing users from converting .d folders to mzml and analyze diaPASEF data :)
I have tried a few …
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@emmastrand @journeymansix here is data from Roberto's paper (Heat resilience in oysters paper). There is a gene counts and transcript counts matrix that we can compare our gene counts to. One issue w…
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Given the new `OnDiskMSnExp` infrastructure, it is time to upgrade the `quantify` method. I am considering the following signature (only focusing on the most important arguments for now):
```r
quant…
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Hi Vadim,
I am currently analyzing the dia-PASEF data for serum samples. Following are the steps I used to do the analysis.
1. I builded the spectral library using FASTA sequences.
2. Please see…
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Should we add more biological discussion and context to the workflow sections?
This would allow us to better motivate why one would like to learn the individual steps!
In fact, now with the new …
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- Describe the issue or question:
Question:
For label-free data, fragpipe offers to export MSSTATS compatible output ( which is really awesome ).
Do you think you could also support this for MSst…
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GIVEN I have accessed DINA as collection manager
WHEN I access a physical entity
THEN I expect to have access to a core set of fields that are specific to the object under view
AND be able …
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Hi all,
I can't understanding why all the peptides are quantified to zero intensity when using labile-phosphor default workflow despite the flag ionquant.run-ionquant=true in the workflow file. (W…
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Hello Fengchao and team,
I have performed a sample prep which uses both isotopic and isobaric labeling to essentially multiply the multiplexing capabilities. Specifically, for isotopic labeling I h…
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ERROR ~ Error executing process > 'NFCORE_QUANTMS:QUANTMS:INPUT_CHECK:SAMPLESHEET_CHECK (sdrf.tsv)'
Caused by:
Process `NFCORE_QUANTMS:QUANTMS:INPUT_CHECK:SAMPLESHEET_CHECK (sdrf.tsv)` terminate…