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Is there a need to classify the output of CoRAL or are all circular paths/amplicons output estimated to be ecDNA specifically?
Thanks again for the tool
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Thank you all for developing CoRAL. I have a question regarding the error message during infer_breakpoint_graph step and wonder if there are any suggestions you could kindly have:
Error message:
T…
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Hi,
I am trying to find a tool that can process nanopore data and identify and trim my PCR primers in the dataset?
How would I do that with porechop_abi? is that possible?
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Hi,
Thanks for a great tool. I am playing around with genotyping amplicon data from Nanopore sequencing. I can get Straglr to call certain STRs but not others, and I wonder if I need to do somethin…
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Hi,
Is there a way to use Pavian with amplicon sequencing data (e.g. 16S or 18S)?
Best,
Sam
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Hi,
In version 0.15.0 seqkit amplicon only keeps one amplicon (the largest) per primer pair. I don't always care about the largest amplicon.
Would it be possible to implement the feature of kee…
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I installed following the directions here https://github.com/pinellolab/CRISPResso2/discussions/158. I downloaded the base pair example file and ran the command provided from examples but I am getting…
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Hello, this is a agreat tool for filtering reads that i would like to use.. My concern is, by defining the insert size, what happens in case the amplicon is bigger or smaller than the defined size inc…
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Hi I would love to be able to run this with wgs sequences, and then again separately with amplicon assembles, so that ultimately I can make 2 trees and compare how they cluster depending on input sequ…
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This is the new Illumina competitor from Element Biosciences @Elembio
People are using it amplicons: [qiime2 forums xref](https://forum.qiime2.org/t/dada2-low-non-chimeric-input-after-denoising/317…