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Hello Team Eqasim !
I have been trying to run eqasim through an Apptainer (ex-Singularity ) container on a HPC server. So far it seems to work.
I also have a Dockerfile.
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### Version of Apptainer
What version of Apptainer (or Singularity) are you using? Run
`apptainer --version` (or `singularity --version`).
```
2394
```
### Expected behavior
`apptaine…
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We are using qsiprep on an HPC cluster that requires use of apptainer (i.e., singularity the next generation).
We found that when we run the singularity command as described [here](https://qsipre…
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**Describe the bug**
Singularity is now Apptainer and we reference Singularity in our docs.
**To Reproduce**
https://docs.dockstore.org/en/develop/advanced-topics/docker-alternatives.html
**Expect…
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Two requirements are missing to run kilosort3 container "remfile" and "pynwb"-
e.g., The code below produces ModuleNotFoundError for these two dependencies:
```
# spike sort with kilosort 3 fr…
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### Version of Apptainer
What version of Apptainer (or Singularity) are you using? Run
`apptainer version 1.3.5`
### Expected behavior
Running Nextflow with container that is build off ubun…
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### Version of Apptainer
apptainer version 1.3.5, built with `--without-suid`
### Expected behavior
What did you expect to see when you do...?
```
apptainer instance start alpine_latest.s…
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Hello,
I am running into an error when trying to run gubbins on the PMEN1 dataset described here: https://github.com/nickjcroucher/gubbins/tree/master/example_data/PMEN1
When running the comman…
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Hi, everyone:
I am running docker/singularity version of MitoHiFi with apptainer as:
`apptainer run -C -B /home -B /project -B /scratch -W ${SLURM_TMPDIR} mitohifi.sif python3 /opt/MitoHiFi/src/…
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### Version of Apptainer
What version of Apptainer (or Singularity) are you using? Run
`apptainer --version` (or `singularity --version`).
apptainer version 1.3.3-1.el8
### Expected behavi…