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create some sample bigwig and bigbed files from NeMO dato to test ingest in to EpiVIZ
zhang data?
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After @khoroshevskyi and I performed some manual testing validating a PEP with the bedboss schema, it appears that if a field is required AND has an enum it does not give an informative error if it f…
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Here I would like to collect a set of interesting questions for data mining of the final mappings:
- [ ] % of coverage of the genome by chromosomes for each Species.
- [ ] % of coverage Transcri…
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This is a combo-issue to refactor BigWig and BigBed stores as node modules
They include similar code and data structures actually so they're a bit intertwined, it is some question of whether bigbed…
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It would be great if it would be possible to have an option to hide any subfeature level when clicking on the sequence.
It would be great to customize a little bit more the whole popup, eg. adding/…
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Hi!
I'm trying to open [this bigBed](https://genomeark.s3.amazonaws.com/species/Pan_troglodytes/mPanTro3/assembly_curated/gene/mPanTro3_refGene.bb) file and running into the following issue:
```…
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[]. Open URL dialog size is single line height, not convenient for entering track urls
[x]. Open bigwig/bigbed/.. file mask usability on windows - some option is preselected (bigbed) and uses can't f…
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The itemRgb/reserved field in bigbed is an example
It would be nice to have this functionality baked in for some cases, since it is difficult to make a color callback to properly express this.
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Some features used in genark/UCSC track hubs
chromAlias.bb (bigbed format refNameAliases)
defaultLocation
html links
bpt file
blat server
isPcr (in silico pcr)
etc.
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> BigBed files can store extra fields in addition to the predefined BED fields. If you add extra fields to your bigBed file, you must include a .as (AutoSQL) format file describing the fields.
Motiva…