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Could the percentage/proportion of query kmers present in each sample be reported rather than the number of kmers present?
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```
$ snakemake -n
AssertionError in line 32 of /Users/karel/github/my/mof-compress/workflow/rules/common.smk:
Unknown suffix of source files (_maxtb in /Users/karel/github/my/bigsi-download/experi…
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note to self: include link to pyo3_branchwater in the release notes :)
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Hello,
I work in a ministry of health in the pathogenes detection.
I read about Bigsi (congratulation!), and I think it could be useful.
However didn't find the docs very useful (sorry), and the …
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I know this is very dependent on the queries we are doing, but in our benchmarks the value for `cobs_kmer_thres` is `0.7`. Should we change the default value from `0.33` to `0.7`? This is related to h…
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(this is going to be anecdata for now, because I ran it a month or two back and forgot the details)
in brief, I wanted to play around with data from [Generation of lineage-resolved complete metagen…
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Sorry for the inactivity in the last few days, I was on vacations but I am back now.
I left the plasmid search running, but it is super slow. It started running COBS on Aug 25th at 17:39. Today (2n…
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Hi,
I tried to follow the manual at [https://bigsi.readme.io/docs/your-first-bigsi](https://bigsi.readme.io/docs/your-first-bigsi) and run BIGSI in docker image (phelimb/bigsi:63768c2).
I got t…
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Hi Phelimb,
trying to run via docker using the example data. Everything runs ok, eg. after bigsi build:
`docker run -v $PWD/example-data:/data phelimb/bigsi:63768c2 bigsi build --config /data/co…
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I am running the R Api. However, it says connection timeout for api.bigsi.io.