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Hi,
Thank you for developing such a wonderful tool!
I am currently looking to utilize the existing CNV profile via the `segs_consensus_fix `parameter to establish definitive CNV boundaries and stat…
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## OD measurements from clonal cultures [DONE]
## Mixing volumes for the mock communities [DONE]
These are generated and reported in [the planning analysis doc](../blob/main/_posts/2021-06-22-pl…
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Hi,
After I got help from @dariober , I finally runned cnv_facets sucessfully.Appreciate! The output included a plot. I have several questions:
1. why was the purity value NA in all of my sample? t…
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Clonal Hematopoiesis, but it's too tricky to spell. :)
**Here's how we are going to do this:**
Rough idea: we swap the TN labels, do unmatched variant calling on the normal, then genotype the tu…
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Hi
I have 50 patients who have responded to chemotherapy from which 17 samples are pre-treatment biopsies and 33 patients post-treatment resections. The pre and post samples are not matched. I want…
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Heyhey, could you add the following biography to the website? I've also attached my picture to the post.
Thanks a lot!
### Lancelot Seillier, M.Sc.
Scientific Researcher / Bioinformatician
…
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`chr11 33692823 Minda_15 N . PASS SVLEN=1490866;SVTYPE=DUP;SUPP_VEC=PB_severus_BND1090_2,PB_r_58,ONT_severus_DUP1176,ONT_r_42,ILL_MantaDUP:TANDEM:179586:0:1:0:0:0,PB_ID_48996_2,ONT_ID_38900_2,ILL_288…
jzook updated
1 month ago
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Possible data:
- [Bystander CD8+ T cells are abundant and phenotypically distinct in human tumour infiltrates](https://www.ncbi.nlm.nih.gov/pubmed/29769722): https://flowrepository.org/id/FR-FCM-ZY…
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Expected Behavior
The existing terms are confusing.
- Basic project_types (folder, breeding_program) are not within project_type, and a basic 'trial' project_type is missing.
- It's unclear ho…
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## 🐛 Bug
Hi,
Thanks so much for this amazing tool, it's been really helpful in analyzing TCR data.
I have been using Immunarch without a problem with previous versions of Mixcr.
However, ever…