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@manerotoni @ssgpers @maulakhan
This activity is rather dumb: https://neubias.github.io/training-resources/pixels/index.html#activities
Do you have ideas for how to make this more interesting a…
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It would be nice if npy2bdv would also offer the option to store data in a different datatype than int16. Maybe the writer could give a warning if data might have been altered? This is the case for an…
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@henrypinkard:
There's a few overlapping things in the core that would need to get sorted out here. Multi-channel cameras, multi-component cameras (rgb falls here i think), and multi-camera device ad…
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Dear all,
I have a set of CyCIF images, and I am consistently unable to align the DNA channel. This is one of the sets I’m working with.
[https://we.tl/t-ayTVDI9xbd](url)
ashlar IF1-A-01_F0002_…
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For multiple genomic data, most of the information can be stored as matrices. The most striking example is with SNP data, which can be stored as matrices with thousands to hundreds of thousands of row…
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Hello all,
First a quick note: I put green over the majority of the neuron just to make sure I'm not accidentally sharing an image I'm not supposed to share, I left the axon so you can see the im…
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I've proposed a solution to this issue in a pull request #40 .
The [NMS implementation](https://github.com/mpicbg-csbd/stardist/blob/f8e63dc3fe1c662b4ee71b2cc54d01728b8bd6a5/stardist/lib/stardist3d…
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Dear all,
How should I set up "xy_pix", one of the Image Parameters?
The default setting is "xy_pix=0.653 * 2", but I don't understand how this value is derived.
What is the appropriate value for…
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I'm wondering what the best practice would be for dealing with 3D bubbles (or in my case, cells). Any guidance would be appreciated.
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We are using a Leica Confocal Microscope to measure FCS. The Leica Application Suite gives us a .pt3 file, but unfortunately with the time format "dd-mm-yy" which is why we get the following error:
…