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https://github.com/waldronlab/CNVWorkshop
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for @ggoetznoaa / @mgavery can advise
TLDR: [Nightingales Folder](http://owl.fish.washington.edu/nightingales/C_gigas/) - F05/F14 prefix
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Pelican Service:
- [x] Client
**Is your feature request related to a problem? Please describe.**
With the ever increasing number of utilities out there for copying files, directories, and objects…
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Hi,
We would like to have the following new terms:
1) copy neutral loss of heterozygosity (synonym CNLOH)
2) amplification (synonym: AMP)
3) amplification with loss of heterozygosity (synonym: amplif…
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Hi,
I am new to karyoploteR. I want to visualize CNV data. I have an input file with a genomic location and copy number. I wonder what input file format is acceptable for karyoploteR.
Thanks
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I am trying to use GDCprepare on a query for CNV data with legacy = T, but I get the error :
> Error in if (query$data.type == "Gene Level Copy Number Scores") { :
missing value where TRUE/FAL…
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I did
```r
library(TCGAbiolinks)
query_cnv In addition: Warning message:
> In rep(no, length.out = len) : 'x' is NULL so the result will be NULL
Debugging GDCprepare found out the error is com…
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I want to get gene-level copy number values for a couple of cancer types and I use
```r
library(TCGAbiolinks)
copyQuery
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The current Obj-C name generation makes clunky methods that don't feel like Dart or like Obj-C. I think it would be much better if it used heuristics like Swift/Obj-C interop, and signature segments w…