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Hello and congratulations with the publication.
Not sure if this is a place to ask - but I was wondering, is there a list of Illumina methylation microarray CpGs used by your PCR2 aging index? I we…
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Přidat kontrolu nahraných souborů - je nutné, aby byly nahrané:
- povinné - shp, dbf
- vhodné - cpg, prj (kódování, epsg)
Také přidat kontrolu velikosti souborů. Velikost souboru dát do configu.
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Hi.
I'm trying to do combine_CpG_sites with my 1359 samples.
However, the error message "Error! Cannot read input file 1021st sample" appears when receiving more than 1020 samples as input.
…
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Although labeling in preprocessing step has "sequence" level
It doesn't support because there is only case:
```
if level == "function":
cpg_graphs: List[Dict[str, Union[str, List[str], Lis…
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Hi everyone,
I ran some samples using an updated Dorado model and I'm getting different thresholds from Modkit for the same sample. In my case, I have a lower calling threshold compared to, for examp…
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Thanks for your work! I want to get an example of CPG, but when I tried to use your function:
```
cpg_file = process.joern_parse(joern_cli_dir, input_path, output_path, cpg_fname)
json_files = pro…
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**Is your feature request related to a problem? Please describe.**
I want to use joern to extract cpgs for input into a machine learning model but I'm finding it difficult to extract and keep track o…
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I am currently comparing different methylation calling protocols (including enzymatic technologies), but for the sake of the experiments I also need to report the coverage per detected CpG. Could you …
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# 深入浅出Joern(一)Joern与CPG是什么? · LoRexxar's Blog
[https://lorexxar.cn/2023/08/21/joern-and-cpg/](https://lorexxar.cn/2023/08/21/joern-and-cpg/)
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Error in bsseq::BSmooth(freqgpc, ns = 10, h = 100, verbose = TRUE) :
BSmooth() encountered errors: 148 of 148 smoothing tasks failed.
In addition: Warning message:
In parallel::mccollect(wait = T…