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Hi all,
I just tried to create some simple stochastic model and reproduce the results in COPASI (see below).
It seems like the roadrunner gillespie integrator is not calculating the particle number i…
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The Gillespie docs might need to be reworked because it appears to be out of sync with the actual functionality. eg the docs claim that the gillepsie method will take a seed argument but adding a seed…
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Based on pattern used in
Tan, Shawn Zheng Kai, Huseyin Kir, Brian D. Aevermann, Tom Gillespie, Nomi Harris, Michael J. Hawrylycz, Nikolas L. Jorstad, et al. 2023. “Brain Data Standards - A Method …
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**Is your feature request related to a problem? Please describe.**
I want to be able to use values from a time series inside the rule propensities - this should take the form of model constants and s…
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Thanks a lot for this very useful module!
I have started working with it and I was wondering if you could possibly help me deciding which simulation function is the best for what I want to do. I ha…
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As mentioned in [this discussion](https://github.com/Ouranosinc/xclim/discussions/1616#) on the xclim forum. There currently is a licensing conflict with xclim's Apache 2.0 license and lmoments3 GPL 3…
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If someone has a write in membership, it appears that they get an invoice that is not directly tied to the invoice to the membership that made the purchase (there's a comment with an invoice number), …
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Version 4.4.0 (Windows 11)
When using SBML and the Gillespie solver all replicates are synchronized. There is no method to set a seed for each model instance or to otherwise knock the simulator out o…
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This is just an idea: couldn't the gillespie function use a dictionnary instead
of a list of values?
This would allow the transition functions to be more readable (and avoid wrong
results from …
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Congo should make the provision of postal addresses by attendees be required, not optional.
If we don't have a postal address and someone is registered on someone else's invoice, we could use the p…