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### Background
This is a new project, with the goal of creating a Python application that creates a network of interactions based on LLM analysis of a published paper. Statements of relationships in …
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Hey, I am very willing and interested in contributing to the org, but as I am new to open source, could you please guide me on how to start?
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Should we look at Vega/Altair/Plotly/... based plot backends to provide interactive graphic capabilities from within a jupyter notebook. With the matplotlib backend you just get PNGs (at least by defa…
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### Background
[SnapGene](https://www.snapgene.com/) is a popular DNA design tool, but uses a custom `.dna` file format. There are two open software tools for reading .dna files into GenBank format, …
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Update the README with relevant information from the the Google Summer of Code Issue this project will be based on, i.e., https://github.com/nrnb/GoogleSummerOfCode/issues/192
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### Background
Life science researchers use computational models to articulate and tes…
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**Description of new feature**
Same as https://github.com/cytoscape/cytoscape.js/issues/1944 and https://github.com/nrnb/GoogleSummerOfCode/issues/61:
Create an API similar to [cy.png](https://js.cy…
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**UPDATES FOR 2022: Size and length of project must now be defined and has been added to the template.**
### Background
Describe the current state of the project and the main problem or issue bein…
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pySBOL2 uses the SBOL online validator/converter at https://validator.sbolstandard.org/ for validation; we also use it for conversion to GenBank. Although this was stable for a long time, it has recen…
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### Background
The "Computational Modeling in Biology" Network (COMBINE, http://co.mbine.org/standards) is an initiative to coordinate the development of the various community standards and formats i…