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From @cmeesters:
> Kallisto performs (wording according to docs) a "pseuoalignment" - it is not a classical aligner and should
> not be mentioned as such.
> "If you know about the Kallisto sof…
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Hi I am getting the following error
I build the index with the kallisto provided with kallisto-align and also installing it with conda on a separate environment. On both cases a get the following err…
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Hello, I tried to get this tool running but encounter an issue. The following are the code and error messages that I got:
Code:
`check_strandedness --gtf ref/Mus_musculus.GRCm38.93.gtf --transcrip…
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Hi,
I'm analyzing single-cell data (from Split-seq) and was able to run kallisto pseudo on a batch file with all the fastq from each of my cells.
I was hoping to convert the output of kallisto…
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### Description of feature
Hi,
I’d like to implement an `auto-detection module` to automatically identify the chemistry type for scRNA-seq libraries. This feature would help address scenarios where …
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Hi Dr. Zhang,
I am trying the following commend to run DARTS:
` Darts_DNN build_feature -i bayes_infer/A5SS.darts_bht.flat.txt -c ~/.darts/DNN/v0.1.0/trainedParam/A5SS-trainedParam-EncodeRoadmap…
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Hi,
I am running into an error with `funannotate update`, trying to add UTRs to existing CDS annotations. It looks like it is an issue with `Kallisto` finding duplicate fasta header names in `update…
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Hi,
This seems to be related to issue #399 which had been closed, but I'm unsure what the solution was as I continue to get errors.
I installed kallisto from conda which installed kallisto versi…
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I can load my fasta and run the indexing function fine, but it simply produces nothing. The outpout looks like below in my terminal:
[build] loading fasta file Homo_sapiens.GRCh38.cdna.all.fa
[bui…
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https://www.synapse.org/#!Synapse:syn15574060
not very useful separated into so many individual folders with no readme.