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Lets see if it works to discuss here.
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Hello,
I am attempting to use the PLIER package for pseudobulk analysis of single-cell RNA sequencing data. I have generated pseudobulk data using the PseudobulkExpression function from Seurat and …
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Thank you for this cool tool!
I have a question regarding running pathways activity inference for scRNAseq data. I was wondering if it is only appropriate to run mlm method or also ok to run decoup…
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Hello,
I am using Enrichr in "R" for my pathway analysis. It is not references in the package description https://cran.r-project.org/web/packages/enrichR/enrichR.pdf how to define the background in…
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The people always want subsequent pathway analysis of the DEGs.
I used the
* Piano R package
for this sometimes. What I really like is
* WebGestalt
that we can maybe also use locally…
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https://decoupler-py.readthedocs.io/en/latest/index.html
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Can be based on the implementation in scFlow
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Standing up a strategy & design plan for communications skills-building.
All development work identified in process happening in [Workspace - Openscapes + Liminal - Comms Pathway](https://docs.goo…
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In GitLab by @kelsey.chetnik on Jun 15, 2020, 12:23
Extend the functionality of mt_stats_pathway_enrichment.R and mt_stats_pathway_enrichment_with_differential_analysis.R. Talk to Parviz to check wha…
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Hi,
I have found this to be very interesting and played with some data. I'm wondering if I have a list of genes from DEA analysis and the KEGG Ortholog (KO) IDs from another analysis. How can I ma…